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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set alfalfa-Ms Sledge 2005
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: alfalfa - Ms Sledge 2005 [ View Map Set Info ]
Map Name: 6
Map Start: 0.00 cM
Map Stop: 48.02 cM
Features by Type:
11 SSR
11 Total

Map Features

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Items 1 to 11 of 11.
alfalfa - Ms Sledge 2005 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BE112 SSR 0.09 No other positions
MTIC343 SSR 0.00 alfalfa - Ms Julier 2003 - 6 MTIC343 SSR 80.88 (cM) Automated name-based View Maps
BE137 SSR 15.32 No other positions
AFca11 SSR 38.25 No other positions
MTIC153 SSR 39.16 barrel medic - Young (U. Minn) 2006 - 6 MTIC153 SSR 33.20 (cM) Automated name-based View Maps
alfalfa - Ms Julier 2003 - 6 MTIC153 SSR 60.52 (cM) Automated name-based View Maps
AW115 SSR 39.93 No other positions
Mt3D03 SSR 12.05 No other positions
AW01 SSR 20.72 No other positions
MTBA32F05R1 SSR 38.84 No other positions
BF69 SSR 39.34 No other positions
BE92 SSR 48.02 No other positions